Thursday, March 6, 2014

Immune System Quiz

The Question - QUIZ
An important defense against disease in vertebrate animals is the ability to eliminate, inactivate, or destroy foreign substances and organisms. Explain how the immune system achieves all of the following.
1) Provides an immediate nonspecific immune response
2) Activates T and B cells in response to an infection
3) Responds to a later exposure to the same infectious agent
4) Distinguishes self from nonself

General Idea --- What is immune system:
I. The purpose of the immune system is to keep infectious microorganisms, such as certain bacteria, viruses, and fungi, out of the body, and to destroy any infectious microorganisms that do invade the body. The immune system is made up of a complex and vital network of cells and organs that protect the body from infection.

II. The organs involved with the immune system are called the lymphoid organs, which affect growth, development, and the release of lymphocytes (a certain type of white blood cell). The blood vessels and lymphatic vessels are important parts of the lymphoid organs, because they carry the lymphocytes to and from different areas in the body. Each lymphoid organ plays a role in the production and activation of lymphocytes. 
Lymphoid organs include:
  • adenoids (two glands located at the back of the nasal passage)
  • appendix (a small tube that is connected to the large intestine)
  • blood vessels (the arteries, veins, and capillaries through which blood flows)
  • bone marrow (the soft, fatty tissue found in bone cavities)
  • lymph nodes (small organs shaped like beans, which are located throughout the body and connect via the lymphatic vessels)
  • lymphatic vessels (a network of channels throughout the body that carries lymphocytes to the lymphoid organs and bloodstream)
  • Peyer's patches (lymphoid tissue in the small intestine)
  • spleen (a fist-sized organ located in the abdominal cavity)
  • thymus (two lobes that join in front of the trachea behind the breast bone)
  • tonsils (two oval masses in the back of the throat)
Lymphoid organs
1. Provides an immediate nonspecific response
For immune system, there are physical, chemical and cellualr defenses against foreign invasions, such as viruses, bacteria, and other agents of disease. During the early stages of an infection, there is an inflammatory repsonse (aka nonspecific response)
  • Non-specific attack
  • Phagocytes active ("eat" pathogen)
Nonspecific Response is our second line of defense. it provides us immediate defense against pathogen infection. It does noe target a speicific cell. The elements of the non-specific immune system include anatomical barriers, secretory molecules and cellular components. Among the mechanical anatomical barriers are the skin and internal epithelial layers, the movement of the intestines and the oscillation of broncho-pulmonary cilia. Associated with these protective surfaces are chemical and biological agents.

Anatomical barriers to infections
The epithelial surfaces form a physical barrier that is very impermeable to most infectious agents. Thus, the skin acts as our first line of defense against invading organisms. Also, movement due to cilia or peristalsis helps to keep air passages and the gastrointestinal tract free from microorganisms. The flushing action of tears and saliva helps prevent infection of the eyes and mouth as fatty acids in sweat inhibit the growth of bacteria, and lysozyme and phospholipase found in tears, saliva and nasal secretions can break down the cell wall of bacteria and destabilize bacterial membranes. The trapping effect of mucus that lines the respiratory and gastrointestinal tract helps protect the lungs and digestive systems from infection. 

B. Humoral barriers to infection
The anatomical barriers are very effective in preventing colonization of tissues by microorganisms. However, when there is damage to tissues the anatomical barriers are breached and infection may occur. Once infectious agents have penetrated tissues, acute inflammation defense mechanism would then kick in. Humoral factors play an important role in inflammation, which is characterized by edema and the recruitment of phagocytic cells. These humoral factors are found in serum or they are formed at the site of infection.

Table 2. Physico-chemical barriers to infections
System/Organ
Active component
Effector Mechanism
SkinSquamous cells; SweatDesquamation; flushing, organic acids
GI tractColumnar cellsPeristalsis, low pH, bile acid, flushing, thiocyanate
LungTracheal ciliaMucocialiary elevator, surfactant
Nasopharynx and eyeMucus, saliva, tearsFlushing, lysozyme
Circulation and lymphoid organs
Phagocytic cells
NK cells and K-cell
LAK
Phagocytosis and intracellular killing
Direct and antibody dependent cytolysis
IL2-activated cytolysis
SerumLactoferrin and TransferrinIron binding
InterferonsAntiviral proteins
TNF-alphaantiviral, phagocyte activation
LysozymePeptidoglycan hydrolysis
FibronectinOpsonization and phagocytosis
ComplementOpsonization, enhanced phagocytosis, inflammation


C. Cells for nonspecific response 
Phagocytes - cells which "eat" foreign material to destroy them
Phagocytes are formed from stem cells in bone marrow (stem cells are undifferentiated WBC's) 
Neutrophil- phagocytize bacteria. Polymorphonuclear cells are recruited to the site of infection where they phagocytose invading organisms and kill them intracellularly. In addition, PMNs contribute to collateral tissue damage that occurs during inflammation.
Eosinophils - secrete enzymes to kill parasitic worms among other pathogins. Eosinophils have proteins in granules that are effective in killing certain parasites.  
Macrophage - "big eaters" phagocytize just about anything. Tissue macrophagesand newly recruited monocytes, which differentiate into macrophages, also function in phagocytosis and intracellular killing of microorganisms. In addition, macrophages are capable of extracellular killing of infected or altered self target cells. Furthermore, macrophages contribute to tissue repair and act as antigen-presenting cells, which are required for the induction of specific immune responses.
Natural killer (NK) and lymphokine activated killer (LAK) cells – NK and LAK cells can nonspecifically kill virus infected and tumor cells. These cells are not part of the inflammatory response but they are important in nonspecific immunity to viral infections and tumor surveillance. 
Macrophage destroying bacterial cells




2. Activates T and B cells in response to an infection
T cells (Helper T cells and Cytotoxic T cells)
T cells arise from stem cells in the bone marrow, and then travel to the thymus where the differentiate and mature. At maturity, they acquire receptors for self markers (MHC molecules) and for antigen-specific receptors. They are then released into the blood as "virgin" T cells.
T cells ignore other cells with MHC molecules and they ignore free-floating antigens. However, they will bind with a antigen-presenting macrophage (a macrophage possessing a MHC-antigen complex). This binding promotes rapid cell division and differentiation into effector and memory cells (all with receptors for the antigen).
Effector helper T cells secrete interlukins (stimulate both T and B cells to divide and differentiate).
Effector cytotoxic T cells recognize infected cells with the MHC-antigen complex. They then destroy the cell with perforans (enzymes which perforate the cell membrane, allowing cytoplasm to leak out) and other toxins which attack organelles and DNA.

B cells and Antibodies
B cells also arise from stem cells in the bone marrow. As they develop and mature, they start synthesizing a single type of antibody.
Antibodies are proteins which recognize antigens.
The virgin B cell produces antibodies which move to the cell surface and stick out.
The B cell floats in the blood when it encounters the specific antigen it becomes primed for replication.
The B cell must receive an interleukin signal from a helper T cell which has already become activated by a macrophage with a MHC-antigen complex. This promotes rapid cell division.
The B cell population then differentiates into effector and memory B cells.
The effector B cells then produce a staggering amount of free-floating antibodies.
When these free-floating antibodies encounter an antigen, they tag it for destruction by phagocytes and complementary proteins.

*ADAPTIVE immunity = highly specific for a particular pathogen / antigen.
Antigen presenting cells present foreign antigen on their surface.
  • Antigen is recognized by T and B cells.
  • Cytotoxic T cells kill infected cells.
  • Helper T cells Activate Macrophages, T and B cells.
  • B cells produce AntiBodies.
  • AntiBodies bind to antigens and bring about: 
  • Neutralization: pathogen can’t adhere to host cell
  • Opsonization: makes it easier for phagocytosis
  • Complement activation: kills infected cell by punching holes in cell membrane.
  • Memory cells are made that are much more efficient (does NOT need T cell activation) in proliferating and making antibodies in case the same infection strikes in the future.
  • Memory cells allow the body to mount a greater, and more sustained response against the same pathogen during secondary response.







3. Responds to a later exposure to the same infectious agent
Immune memory --- when an antigen makes contact for the first time with cells of the humoral immune system, B lymphocytes that are producers of specific immunoglobulins against that antigen multiply and in days synthesize their antibodies. This is called primary response. Some of these specific B lymphocytes remain in the circulation for a long time, sometimes during the entire life of the individual, and they become the memory cells of the immune system. T cells can also produce memory cells with an even longer life span than B memory cells. When the body is exposed in the future to the same antigen, B and T memory cells help the immune system to activate much faster, and the production of antibodies will be faster and more intense since the immune system is already prepared to react against that antigen. This is called the secondary response. 
Examples of this phenomenon could be chicken pox and cancer. As we known, if a person had chicken pox before, that person is most likely never getting chicken pox again. The same goes for who had the immunization of chicken pox. Also, when fighting cancer, our immune system undergoes the same mechanism. When one's body is exposeed to cancerous cells, one's immune system would remember these cancerous cells and recognize these cells next time. However, if one happens to develop cancer, one's imuune system is probably being worn out.  





4. Distinguishes self from nonself
One of the most essential abilities of the immune response is the ability to distinguish between "self" and "non-self." Every cell in one's body carries the same set of distinctive surface proteins that distinguish one as "self." Normally one's immune cells do not attack one's own body tissues, which all carry the same pattern of self-markers; rather, one's immune system coexists peaceably with one's other body cells in a state known as self-tolerance. This set of unique markers on human cells is called the major histocompatibility complex (MHC). There are two classes: MHC Class I proteins, which are on all cells, and MHC Class II proteins, which are only on certain specialized cells.

Any non-self substance capable of triggering an immune response is known as an antigen. An antigen can be a whole non-self cell, a bacterium, a virus, an MHC marker protein or even a portion of a protein from a foreign organism. The distinctive markers on antigens that trigger an immune response are called epitopes. When tissues or cells from another individual enter your body carrying such antigenic non-self epitopes, your immune cells react. This explains why transplanted tissues may be rejected as foreign and why antibodies will bind to them.



Every cell in one's body is covered with these MHC self-marker proteins, and--except for identical twins--individuals carry different sets. MHC marker proteins are as distinct as blood types and come in two categories--MHC Class I: humans bear 6 markers out of 200 possible variations; and MHC Class II: humans display 8 out of about 230 possibilities ( National Cancer Institute 2014).

Summary
Immunity can be either natural or artificial, innate or acquired=adaptive, and either active or passive.
Active natural (contact with infection): develops slowly, is long term, and antigen specific.
Active artificial (immunization): develops slowly, lasts for several years, and is specific to the antigen for which the immunization was given.
Passive natural (transplacental = mother to child): develops immediately, is temporary, and affects all antigens to which the mother has immunity.
Passive artificial (injection of gamma globulin): develops immediately, is temporary, and affects all antigens to which the donor has immunity. 





Sources from:
Mr. Kevin Quick, Lecture at The Webb Schools, 2014.
http://thelifeofapremed.tumblr.com/post/56690250816/leukocytes-macrophages-neutrophils-mast-cells
http://pathmicro.med.sc.edu/ghaffar/innate.htm
http://www.cancer.gov/cancertopics/understandingcancer/immunesystem/AllPages
http://www.uic.edu/classes/bios/bios100/lecturesf04am/lect23.htm
http://www.course-notes.org/Biology/Outlines/Chapter_43_The_Immune_System 
http://en.wikipedia.org/wiki/Polyclonal_B_cell_response

Saturday, March 1, 2014

No love for Pineapple --- The Jell-O Lab

Linfei Liu
A Block Hon. Bio
02/16/14
No Love For Jolly Pineapple (Enzyme’s effectiveness in Relation to Temperature) 
                                                                                                                        -- The Jell-O Biology Lab
ABSTRACT:
For this lab, we explored the properties of the enzyme, Bromelain, in relation to temperature and how temperature could affect the function of Bromelain; furthermore, we figured out the relationship of Bromelain and Jell-O formation. During this lab, we discovered that temperature could change the shape of Bromelain; thus, temperature could affect the function of enzyme, namely Bromelain in this lab. Also, we found out that Bromelain would become ineffective and unable to break down the collagen of the Jell-O at high temperatures. This discovery confirms our prior knowledge of the characteristics of enzymes that enzymes function properly under certain circumstances, such as optimal pH level and temperature.

INTRODUCTION

QUESTION:

Why does it say on the directions “Do not use fresh or frozen pineapple, use cooked or canned”? What is the difference? Why would it matter? What does Jell-O have in it? What does pineapple have in it that doesn’t mix?
 
BACKGROUND:
Bromelain is a natural enzyme that could be found in the juice, stem, and fruit of the pineapple. The enzyme, Bromelain has been used as a digestive enzyme to aid the internal organs in digestion. Also, it is an anti-inflammatory enzyme as it is used for reducing swelling (inflammation), especially of the nose and sinuses, after surgery or injury. Furthermore, Bromelain supplements are promoted as an alternative remedy for various health problems including joint inflammation and cancer. Bromelain has been used for hundreds of years in folk medicine. As mentioned before, this type of enzyme would affect the formation of Jell-O. Bromelain contains two enzymes that have the ability of breaking down proteins called proteases. Jell-O, a type of gelatin, structures itself by form links between chains of collagen. However, Bromelain could cut these chains of collagen and keep the gelatin from being jelly properly. Fresh pineapple does this as a natural self-defense. Whereas canned pineapple is heated during the canning process. Thus, the enzymes in Bromelain in the pineapple are inactivated as their optimal temperature of functioning is changed to about 158° F. This is the reason why Jell-O needs to be formed by using canned pineapple.

HYPOTHESIS:
If we use canned pineapple, which is already heated, Jell-O will form. Yet, other types of pineapple would not work, such as frozen pineapple and fresh pineapple. 

METHODOLOGY

MATERIALS:
· 6.69g of Jell-O powder
· 39.4mL of hot water
· 39.4mL of cold water
· 2.4g frozen pineapple
· 2.4g canned pineapple
· 2.4g fresh pineapple
· 4 petri plates with covers
· 3 graduated cylinders
· 3 stirring rods
· 1 refrigerator
· 1 hot plate
· 1 beaker

PROCEDURE:

1. Boiling an amount of water greater than 80mL in a beaker on the hot plate.
2. Prepare the variables, such as frozen pineapple, canned pineapple juice, and fresh pineapple juice.
3. Put these variables into their own petri plate and label them
4. Make a control plate (no pineapple presented in the plate)
5. Pour 6.6 g of Jell-O powder into the beaker
6. Add 39.4 mL of boiling water into the beaker, and mix the powder and the water well with the stirring rod.
7. For each plate, evenly distribute 10mL of hot water, 10mL of cold water, 1.65g of Jell-O powder, and 1mL of the pineapple juice (depends on the plate, pour in different type of juice or pour in nothing).
8. Cover all the petri plates and carefully label each one of them.
9. Bring the petri plates to the refrigerator and begin cooling.
10. Allow the Jell-O to settle, come back next day to check the data.
Canned Pineapple---formed Jell-O 
Canned Pineapple
Fresh Pineapple --- nothing 
Frozen Pineapple --- nothing
Control Plate (no pineapple) --- formed Jell-O
RESULTS:

Plates
Set
Liquid
Jell-O formation
Control
(No pineapple)
Yes
No
Successful
Jell-O with frozen pineapple
No
Yes
Fail
Jell-O with canned pineapple
Yes; yet, not as firm as the control plate
No
Successful
Jell-O with fresh pineapple
No
Yes
Fail
As shown in the graph, Jell-O is formed in the control plate and the plate with canned pineapple juice, and the plate with frozen pineapple juice and the plate with fresh pineapple would not form Jell-O.

CONCLUSION:
As mentioned in the hypothesis, if we use canned pineapple, which is already heated, Jell-O will form. Yet, other types of pineapple would not be able to make Jell-O become set, such as frozen pineapple and fresh pineapple. In relation to our hypothesis, our final result fails to reject our hypothesis. While the Jell-O containing fresh pineapple/ frozen pineapple did not become set, the canned pineapple formed Jell-O. Our testing result supports our hypothesis. The lab result is successful. Therefore, when Jell-O mixes with the pineapple that still containing Bromelain, Jell-O would not be set properly as Bromelain would break Collagen Bonds. Nevertheless, when Jell-O mixes with heated pineapple (canned pineapple), Jell-O would form properly due to the reformation of the collagen bond’s shapes and active site. Bromelain is inactive in the canned pineapple. During this lab, we also set up a control plate with nothing in it but Jell-O (this is the regular plate), and we kept the amount of hot water, the amount of cold water, the amount of Jell-O powder, and the amount of the juice to be constant. Also, we kept the temperature during the Jell-O- formation period to be the same, since all the plates were placed in the same fridge. Although our final result is successful, there are still some sources of error as well as human error:
1) Inaccurate measurement of the amount of necessities that we need for the lab may cause some errors.
2) False measurement of the amount of product.
3) Need to do more trials to confirm a more accurate result.
4) Could have tested other fruits to check the result.
5) Contamination of different types of pineapples
6) Crossing contamination of Bromelain.
Last but not least, through this lab, we have learned a critical characteristic of enzymes -- the effect of temperature on the function of enzymes. 

CITATION:

American Cancer Society (2001, April 06). Bromelain. Retrieved from http://www.cancer.org/treatment/treatmentsandsideeffects/complementaryandalternativemedicine/herbsvitaminsandminerals/Bromelain
Mr. Kevin Quick, Lecture at The Webb Schools, 2014.
Natural Medicines Comprehensive Database (2013, April 24). Bromelain. Retrieved from http://www.nlm.nih.gov/medlineplus/druginfo/natural/895.html